PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18421.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 358aa    MW: 41297.2 Da    PI: 9.8989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18421.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-16655148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                             r+rW +eEd ll  +vkq+G++ W++++++m   ++R +k+c +rw +yl
  mrna18421.1-v1.0-hybrid  6 RQRWKPEEDALLRAYVKQYGPREWNLVSQRMStpLNRDAKSCLERWKNYL 55
                             89**********************************************97 PP

2Myb_DNA-binding383.9e-1261105147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  mrna18421.1-v1.0-hybrid  61 KGSLTEEEQRLVICLQEKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 105
                              6788******************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.108159IPR017930Myb domain
SMARTSM007172.0E-13557IPR001005SANT/Myb domain
SuperFamilySSF466895.87E-226100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-21861IPR009057Homeodomain-like
CDDcd001671.85E-8855No hitNo description
PfamPF139216.5E-14970No hitNo description
PROSITE profilePS5129419.47460110IPR017930Myb domain
SMARTSM007171.7E-1060108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1462104IPR009057Homeodomain-like
CDDcd001672.84E-765106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEMKERQRWK PEEDALLRAY VKQYGPREWN LVSQRMSTPL NRDAKSCLER WKNYLKPGIK  60
KGSLTEEEQR LVICLQEKHG NKWKKIAAEV PGRTAKRLGK WWEVFKDKQQ REQKNNNTVV  120
QPIEEGKYDR ILETFAEKLV KERPAPYLMA TSNGAFLHNE ASPAPSMLPP WLSNSNVTSH  180
ARAPSPSVTL SLSATVAPSR TSPPIPWLQP DRGPENSFAL NNLPPHVSVP CGENYVISEL  240
VECSRELEEV HRAWAAHKKE ASWRLRRVEL QLESEKACRK REKMDEIEAK VKALREEQKA  300
ALDRIEAEYR EQIAGLRRDA EIKEQKLADQ WSAKHMRLTQ FLEQMGGRPR LAEPNAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-15994789MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-15994789C-Myb DNA-Binding Domain
1msf_C1e-15994789C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302764.10.0PREDICTED: transcription factor AS1-like
SwissprotO809311e-161AS1_ARATH; Transcription factor AS1
TrEMBLM5WNZ50.0M5WNZ5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s08610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-163MYB family protein